PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_7F7F9918B.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 189aa    MW: 21634.4 Da    PI: 9.298
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_7F7F9918B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.16.8e-2424111289
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                            f+++Y+ ++GF+vrk++++ sk +g+it+ +fvC +eg+r++ +++ + ++  raetrt+Cka++ +++++ +++ evt+++leHnH 
  Traes_1BS_7F7F9918B.1  24 FWRAYGGRAGFDVRKKYNNVSKFDGKITSCRFVCANEGHRKKGQRE-SVQKCFRAETRTDCKARMSLTLDReSENLEVTDVVLEHNHL 110
                            9******************************************999.899999****************9999**************8 PP

                   FAR1  89 l 89 
                            l
  Traes_1BS_7F7F9918B.1 111 L 111
                            7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1924111IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAQSDKGMPQ VGMLFKSSEE AWLFWRAYGG RAGFDVRKKY NNVSKFDGKI TSCRFVCANE  60
GHRKKGQRES VQKCFRAETR TDCKARMSLT LDRESENLEV TDVVLEHNHL LHLPQTRHLM  120
ASQRKISEFQ SFEIEAADDS GGKTQCTSDM NEPSKAQEND DPNMQQGDDL LRAARLKKKE  180
VQSKNSKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460227.16e-78hypothetical protein SORBIDRAFT_02g024940
TrEMBLW5A9Y71e-141W5A9Y7_WHEAT; Uncharacterized protein
STRINGSb02g024940.12e-77(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-13FAR1 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]